Publications 2021

Takata-Tsuji, F., Chounlamountri, N., Do, L.-D., Philippot, C., Novion Ducassou, J., Couté, Y., Ben Achour, S., Honnorat, J., Place, C., & Pascual, O. (2021). Microglia modulate gliotransmission through the regulation of VAMP2 proteins in astrocytes. Glia, 69(1), 61–72.
Adrait, A., Dumonceau, J.-M., Delhaye, M., Annessi-Ramseyer, I., Frossard, J.-L., Couté, Y., & Farina, A. (2021). Liquid Biopsy of Bile based on Targeted Mass Spectrometry for the Diagnosis of Malignant Biliary Strictures. Clinical and Translational Science, 14(1), 148–152.
van Lis, R., Couté, Y., Brugière, S., Tourasse, N. J., Laurent, B., Nitschke, W., Vallon, O., & Atteia, A. (2021). Phylogenetic and functional diversity of aldehyde-alcohol dehydrogenases in microalgae. Plant Molecular Biology.
Felix, J., Siebert, C., Ducassou, J. N., Nigou, J., Garcia, P. S., Fraudeau, A., Huard, K., Mas, C., Brochier-Armanet, C., Couté, Y., Gutsche, I., & Renesto, P. (2021). Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance. Scientific Reports, 11(1), 972.
Trauchessec, M., Hesse, A. M., Kraut, A., Berard, Y., Herment, L., Fortin, T., Bruley, C., Ferro, M., & Manin, C. (2021). An innovative standard for LC-MS-based HCP-profiling and accurate quantity assessment: Application to batch consistency in viral vaccine samples. Proteomics, e2000152.
Rayapuram, N., Jarad, M., Alhoraibi, H. M., Bigeard, J., Abulfaraj, A. A., Völz, R., Mariappan, K. G., Almeida-Trapp, M., Schlöffel, M., Lastrucci, E., Bonhomme, L., Gust, A. A., Mithöfer, A., Arold, S. T., Pflieger, D., & Hirt, H. (2021). Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. Proceedings of the National Academy of Sciences of the United States of America, 118(3).
Gilquin, B., Cubizolles, M., Den Dulk, R., Revol-Cavalier, F., Alessio, M., Goujon, C.-E., Echampard, C., Arrizabalaga, G., Adrait, A., Louwagie, M., Laurent, P., Navarro, F. P., Couté, Y., Cosnier, M.-L., & Brun, V. (2021). PepS: An Innovative Microfluidic Device for Bedside Whole Blood Processing before Plasma Proteomics Analyses. Analytical Chemistry, 93(2), 683–690.
Kerjouan, A., Boyault, C., Oddou, C., Hiriart-Bryant, E., Grichine, A., Kraut, A., Pezet, M., Balland, M., Faurobert, E., Bonnet, I., Coute, Y., Fourcade, B., Albiges-Rizo, C., & Destaing, O. (2021). Control of SRC molecular dynamics encodes distinct cytoskeletal responses by specifying signaling pathway usage. Journal of Cell Science, 134(2).
Vellino, S., Oddou, C., Rivier, P., Boyault, C., Hiriart-Bryant, E., Kraut, A., Martin, R., Coute, Y., Knölker, H.-J., Valverde, M. A., Albigès-Rizo, C., & Destaing, O. (2021). Cross-talk between the calcium channel TRPV4 and reactive oxygen species interlocks adhesive and degradative functions of invadosomes. Journal of Cell Biology, 220(2), e201910079.
Borges, H., Hesse, A.-M., Kraut, A., Couté, Y., Brun, V., & Burger, T. (2021). Well Plate Maker: A user-friendly randomized block design application to limit batch effects in largescale biomedical studies. Bioinformatics (Oxford, England).
Permiakova, O., Guibert, R., Kraut, A., Fortin, T., Hesse, A.-M., & Burger, T. (2021). CHICKN: extraction of peptide chromatographic elution profiles from large scale mass spectrometry data by means of Wasserstein compressive hierarchical cluster analysis. BMC Bioinformatics, 22(1), 68.
Härrer, D., Windhorst, C., Böhner, N., Novion Ducassou, J., Couté, Y., & Gescher, J. (2021). Production of acetoin from renewable resources under heterotrophic and mixotrophic conditions. Bioresource Technology, 124866.
Curien, G., Lyska, D., Guglielmino, E., Westhoff, P., Janetzko, J., Tardif, M., Hallopeau, C., Brugière, S., Dal Bo, D., Decelle, J., Gallet, B., Falconet, D., Carone, M., Remacle, C., Ferro, M., Weber, A. P. M., & Finazzi, G. (2021). Mixotrophic growth of the extremophile Galdieria sulphuraria reveals the flexibility of its carbon assimilation metabolism. The New Phytologist.
Hseiky, A., Crespo, M., Kieffer-Jaquinod, S., Fenaille, F., & Pflieger, D. (2021). Small Mass but Strong Information: Diagnostic Ions Provide Crucial Clues to Correctly Identify Histone Lysine Modifications. Proteomes, 9(2).
Montillet, J.-L., Rondet, D., Brugière, S., Henri, P., Rumeau, D., Reichheld, J.-P., Couté, Y., Leonhardt, N., & Rey, P. (2021). Plastidial and cytosolic thiol reductases participate in the control of stomatal functioning. Plant, Cell & Environment, 44(5), 1417–1435.
Chiari, L., Carpentier, P., Kieffer-Jaquinod, S., Gogny, A., Perard, J., Ravanel, S., Cobessi, D., Ménage, S., Dumas, R., & Hamelin, O. (2021). LEAFY protein crystals with a honeycomb structure as a platform for selective preparation of outstanding stable bio-hybrid materials. Nanoscale.
Postic, G., Andreani, J., Marcoux, J., Reys, V., Guerois, R., Rey, J., Mouton-Barbosa, E., Vandenbrouck, Y., Cianferani, S., Burlet-Schiltz, O., Labesse, G., & Tufféry, P. (2021). Proteo3Dnet: a web server for the integration of structural information with interactomics data. Nucleic Acids Research.
Pallavicini, G., Gai, M., Iegiani, G., Berto, G. E., Adrait, A., Couté, Y., & Cunto, F. D. (2021). Goldberg-Shprintzen syndrome protein KIF1BP is a CITK interactor implicated in cytokinesis. Journal of Cell Science, jcs.250902.
Schmid, F., Novion Ducassou, J., Couté, Y., & Gescher, J. (2021). Developing Rhodobacter sphaeroides for cathodic biopolymer production. Bioresource Technology, 125340.
Edel, M., Sturm, G., Sturm-Richter, K., Wagner, M., Ducassou, J. N., Couté, Y., Horn, H., & Gescher, J. (2021). Extracellular riboflavin induces anaerobic biofilm formation in Shewanella oneidensis. Biotechnology for Biofuels, 14(1), 130.
Alfaro, J. A., Bohländer, P., Dai, M., Filius, M., Howard, C. J., van Kooten, X. F., Ohayon, S., Pomorski, A., Schmid, S., Aksimentiev, A., Anslyn, E. V., Bedran, G., Cao, C., Chinappi, M., Coyaud, E., Dekker, C., Dittmar, G., Drachman, N., Eelkema, R., … Joo, C. (2021). The emerging landscape of single-molecule protein sequencing technologies. Nature Methods, 18(6), 604–617.
Humbert, P., Brennan, M. Á., De Lima, J., Brion, R., Adrait, A., Charrier, C., Brulin, B., Trichet, V., Couté, Y., Blanchard, F., & Layrolle, P. (2021). Apoptotic mesenchymal stromal cells support osteoclastogenesis while inhibiting multinucleated giant cells formation in vitro. Scientific Reports, 11(1), 12144.