Publications

Publications 2018

Eymard-Vernain, E., Coute, Y., Adrait, A., Rabilloud, T., Sarret, G., & Lelong, C. (2018). The poly-gamma-glutamate of Bacillus subtilis interacts specifically with silver nanoparticles. PloS One, 13(5), e0197501. https://doi.org/10.1371/journal.pone.0197501
Govin, J., Barral, S., Morozumi, Y., Hoghoughi, N., Buchou, T., Rousseaux, S., & Khochbin, S. (2018). Characterization of Post-Meiotic Male Germ Cell Genome Organizational States. Methods in Molecular Biology (Clifton, N.J.), 1832, 293–307. https://doi.org/10.1007/978-1-4939-8663-7_16
Salvi, D., Bournais, S., Moyet, L., Bouchnak, I., Kuntz, M., Bruley, C., & Rolland, N. (2018). AT_CHLORO: The First Step When Looking for Information About Subplastidial Localization of Proteins. Methods in Molecular Biology (Clifton, N.J.), 1829, 395–406. https://doi.org/10.1007/978-1-4939-8654-5_26
El Kennani, S., Adrait, A., Permiakova, O., Hesse, A.-M., Ialy-Radio, C., Ferro, M., … Pflieger, D. (2018). Systematic quantitative analysis of H2A and H2B variants by targeted proteomics. Epigenetics & Chromatin, 11(1), 2. https://doi.org/10.1186/s13072-017-0172-y
De Muyt, A., Pyatnitskaya, A., Andréani, J., Ranjha, L., Ramus, C., Laureau, R., … Borde, V. (2018). A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation. Genes & Development, 32(3–4), 283–296. https://doi.org/10.1101/gad.308510.117
Adam, C., Guérois, R., Citarella, A., Verardi, L., Adolphe, F., Béneut, C., … Borde, V. (2018). The PHD finger protein Spp1 has distinct functions in the Set1 and the meiotic DSB formation complexes. PLoS Genetics, 14(2), e1007223. https://doi.org/10.1371/journal.pgen.1007223
Legendre, M., Fabre, E., Poirot, O., Jeudy, S., Lartigue, A., Alempic, J.-M., … Claverie, J.-M. (2018). Diversity and evolution of the emerging Pandoraviridae family. Nature Communications, 9(1), 2285. https://doi.org/10.1038/s41467-018-04698-4
Picard, M. A. L., Cosseau, C., Ferré, S., Quack, T., Grevelding, C. G., Couté, Y., & Vicoso, B. (2018). Evolution of gene dosage on the Z-chromosome of schistosome parasites. ELife, 7. https://doi.org/10.7554/eLife.35684
He, H., Brenier-Pinchart, M.-P., Braun, L., Kraut, A., Touquet, B., Couté, Y., … Bougdour, A. (2018). Characterization of a Toxoplasma effector uncovers an alternative GSK3/β-catenin-regulatory pathway of inflammation. ELife, 7. https://doi.org/10.7554/eLife.39887
Rayapuram, N., Bigeard, J., Alhoraibi, H., Bonhomme, L., Hesse, A.-M., Vinh, J., … Pflieger, D. (2018). Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets ofArabidopsisMitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6. Molecular & Cellular Proteomics: MCP, 17(1), 61–80. https://doi.org/10.1074/mcp.RA117.000135
Burger, T. (2018). Gentle Introduction to the Statistical Foundations of False Discovery Rate in Quantitative Proteomics. Journal of Proteome Research, 17(1), 12–22. https://doi.org/10.1021/acs.jproteome.7b00170
Petosa, C., Govin, J., & Mietton, F. (2018). [A new hope to fight invasive fungal infection]. Medecine Sciences: M/S, 34(2), 123–125. https://doi.org/10.1051/medsci/20183402007
Lacombe, M., Marie-Desvergne, C., Combes, F., Kraut, A., Bruley, C., Vandenbrouck, Y., … Brun, V. (2018). Proteomic characterization of human exhaled breath condensate. Journal of Breath Research, 12(2), 021001. https://doi.org/10.1088/1752-7163/aa9e71
Garnaud, C., García-Oliver, E., Wang, Y., Maubon, D., Bailly, S., Despinasse, Q., … Cornet, M. (2018). The Rim Pathway Mediates Antifungal Tolerance in Candida albicans through Newly Identified Rim101 Transcriptional Targets, Including Hsp90 and Ipt1. Antimicrobial Agents and Chemotherapy, 62(3). https://doi.org/10.1128/AAC.01785-17
Abulfaraj, A. A., Mariappan, K., Bigeard, J., Manickam, P., Blilou, I., Guo, X., … Rayapuram, N. (2018). The Arabidopsis homolog of human G3BP1 is a key regulator of stomatal and apoplastic immunity. Life Science Alliance, 1(2), e201800046. https://doi.org/10.26508/lsa.201800046
Fröhlich, T., Hahn, F., Belmudes, L., Leidenberger, M., Friedrich, O., Kappes, B., … Tsogoeva, S. B. (2018). Synthesis of Artemisinin-Derived Dimers, Trimers and Dendrimers: Investigation of Their Antimalarial and Antiviral Activities Including Putative Mechanisms of Action. Chemistry (Weinheim an Der Bergstrasse, Germany), 24(32), 8103–8113. https://doi.org/10.1002/chem.201800729
Jacob, L., Combes, F., & Burger, T. (2018). PEPA test: fast and powerful differential analysis from relative quantitative proteomics data using shared peptides. Biostatistics (Oxford, England). https://doi.org/10.1093/biostatistics/kxy021
El Kennani, S., Crespo, M., Govin, J., & Pflieger, D. (2018). Proteomic Analysis of Histone Variants and Their PTMs: Strategies and Pitfalls. Proteomes, 6(3). https://doi.org/10.3390/proteomes6030029
Sage, E., Sansa, M., Fostner, S., Defoort, M., Gély, M., Naik, A. K., … Hentz, S. (2018). Single-particle mass spectrometry with arrays of frequency-addressed nanomechanical resonators. Nature Communications, 9(1), 3283. https://doi.org/10.1038/s41467-018-05783-4
Mato, J. M., Elortza, F., Lu, S. C., Brun, V., Paradela, A., & Corrales, F. J. (2018). Liver cancer-associated changes to the proteome: what deserves clinical focus? Expert Review of Proteomics, 15(9), 749–756. https://doi.org/10.1080/14789450.2018.1521277
Nguyen, M. V. C., Adrait, A., Baillet, A., Trocmé, C., Gottenberg, J.-E., & Gaudin, P. (2018). Identification of cartilage oligomeric matrix protein as biomarker predicting abatacept response in rheumatoid arthritis patients with insufficient response to a first anti-TNFα treatment. Joint, Bone, Spine: Revue Du Rhumatisme. https://doi.org/10.1016/j.jbspin.2018.09.005
Shiota, H., Barral, S., Buchou, T., Tan, M., Couté, Y., Charbonnier, G., … Khochbin, S. (2018). Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells. Cell Reports, 24(13), 3477-3487.e6. https://doi.org/10.1016/j.celrep.2018.08.069
Völz, R., Kim, S.-K., Mi, J., Mariappan, K. G., Guo, X., Bigeard, J., … Hirt, H. (2018). The Trihelix transcription factor GT2-like 1 (GTL1) promotes salicylic acid metabolism, and regulates bacterial-triggered immunity. PLoS Genetics, 14(10), e1007708. https://doi.org/10.1371/journal.pgen.1007708
Hahn, F., Hutterer, C., Henry, C., Hamilton, S. T., Strojan, H., Kraut, A., … Marschall, M. (2018). Novel cytomegalovirus-inhibitory compounds of the class pyrrolopyridines show a complex pattern of target binding that suggests an unusual mechanism of antiviral activity. Antiviral Research, 159, 84–94. https://doi.org/10.1016/j.antiviral.2018.09.012
Albaret, M. A., Vermot-Desroches, C., Paré, A., Roca-Martinez, J.-X., Malet, L., Esseily, J., … Diaz, J.-J. (2018). Externalized Keratin 8: A Target at the Interface of Microenvironment and Intracellular Signaling in Colorectal Cancer Cells. Cancers, 10(11). https://doi.org/10.3390/cancers10110452
Dominguez-Medina, S., Fostner, S., Defoort, M., Sansa, M., Stark, A.-K., Halim, M. A., … Hentz, S. (2018). Neutral mass spectrometry of virus capsids above 100 megadaltons with nanomechanical resonators. Science (New York, N.Y.), 362(6417), 918–922. https://doi.org/10.1126/science.aat6457
Jonckheere, J., Deloulme, J.-C., Dall’Igna, G., Chauliac, N., Pelluet, A., Nguon, A.-S., … Gory-Fauré, S. (2018). Short- and long-term efficacy of electroconvulsive stimulation in animal models of depression: The essential role of neuronal survival. Brain Stimulation, 11(6), 1336–1347. https://doi.org/10.1016/j.brs.2018.08.001