Publications 2020

Began, J., Cordier, B., Březinová, J., Delisle, J., Hexnerová, R., Srb, P., Rampírová, P., Kožíšek, M., Baudet, M., Couté, Y., Galinier, A., Veverka, V., Doan, T., & Strisovsky, K. (2020). Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease. The EMBO Journal.
Lezzerini, M., Penzo, M., O’Donohue, M.-F., Marques Dos Santos Vieira, C., Saby, M., Elfrink, H. L., Diets, I. J., Hesse, A.-M., Couté, Y., Gastou, M., Nin-Velez, A., Nikkels, P. G. J., Olson, A. N., Zonneveld-Huijssoon, E., Jongmans, M. C. J., Zhang, G., van Weeghel, M., Houtkooper, R. H., Wlodarski, M. W., … MacInnes, A. W. (2020). Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism. Nucleic Acids Research, 48(2), 770–787.
van Lis, R., Brugière, S., Baffert, C., Couté, Y., Nitschke, W., & Atteia, A. (2020). Hybrid cluster proteins in a photosynthetic microalga. The FEBS Journal, 287(4), 721–735.
Lacombe, M., Jaquinod, M., Belmudes, L., Couté, Y., Ramus, C., Combes, F., Burger, T., Mintz, E., Barthelon, J., Leroy, V., Poujois, A., Lachaux, A., Woimant, F., & Brun, V. (2020). Comprehensive and comparative exploration of the Atp7b −/− mouse plasma proteome. Metallomics, 10.1039.C9MT00225A.
Di Giovanni, D., Lepetit, D., Guinet, B., Bennetot, B., Boulesteix, M., Couté, Y., Bouchez, O., Ravallec, M., & Varaldi, J. (2020). A behavior-manipulating virus relative as a source of adaptive genes for Drosophila parasitoids. Molecular Biology and Evolution.
Farhat, D. C., Swale, C., Dard, C., Cannella, D., Ortet, P., Barakat, M., Sindikubwabo, F., Belmudes, L., De Bock, P.-J., Couté, Y., Bougdour, A., & Hakimi, M.-A. (2020). A MORC-driven transcriptional switch controls Toxoplasma developmental trajectories and sexual commitment. Nature Microbiology.
Bouyssié, D., Hesse, A.-M., Mouton-Barbosa, E., Rompais, M., Macron, C., Carapito, C., de Peredo, A. G., Couté, Y., Dupierris, V., Burel, A., Menetrey, J.-P., Kalaitzakis, A., Poisat, J., Romdhani, A., Burlet-Schiltz, O., Cianférani, S., Garin, J., & Bruley, C. (2020). Proline: an efficient and user-friendly software suite for large-scale proteomics. Bioinformatics, btaa118.
Jeudy, S., Bertaux, L., Alempic, J.-M., Lartigue, A., Legendre, M., Belmudes, L., Santini, S., Philippe, N., Beucher, L., Biondi, E. G., Juul, S., Turner, D. J., Couté, Y., Claverie, J.-M., & Abergel, C. (2020). Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world. The ISME Journal, 14(3), 727–739.
Nguyen, M. V. C., Courtier, A., Adrait, A., Defendi, F., Couté, Y., Baillet, A., Guigue, L., Gottenberg, J.-E., Dumestre-Pérard, C., Brun, V., & Gaudin, P. (2020). Fetuin-A and thyroxin binding globulin predict rituximab response in rheumatoid arthritis patients with insufficient response to anti-TNFα. Clinical Rheumatology.
Monestier, M., Pujol, A. M., Lamboux, A., Cuillel, M., Pignot-Paintrand, I., Cassio, D., Charbonnier, P., Um, K., Harel, A., Bohic, S., Gateau, C., Balter, V., Brun, V., Delangle, P., & Mintz, E. (2020). A liver-targeting Cu( i ) chelator relocates Cu in hepatocytes and promotes Cu excretion in a murine model of Wilson’s disease. Metallomics, 10.1039.D0MT00069H.
Crespo, M., Damont, A., Blanco, M., Lastrucci, E., Kennani, S. E., Ialy-Radio, C., Khattabi, L. E., Terrier, S., Louwagie, M., Kieffer-Jaquinod, S., Hesse, A.-M., Bruley, C., Chantalat, S., Govin, J., Fenaille, F., Battail, C., Cocquet, J., & Pflieger, D. (2020). Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes. Nucleic Acids Research, 48(8), 4115–4138.
Postic, G., Marcoux, J., Reys, V., Andreani, J., Vandenbrouck, Y., Bousquet, M.-P., Mouton-Barbosa, E., Cianférani, S., Burlet-Schiltz, O., Guerois, R., Labesse, G., & Tufféry, P. (2020). Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration. Journal of Proteome Research, acs.jproteome.0c00066.
Van Gool, A., Corrales, F., Čolović, M., Krstić, D., Oliver-Martos, B., Martínez-Cáceres, E., Jakasa, I., Gajski, G., Brun, V., Kyriacou, K., Burzynska-Pedziwiatr, I., Wozniak, L. A., Nierkens, S., Pascual García, C., Katrlik, J., Bojic-Trbojevic, Z., Vacek, J., Llorente, A., Antohe, F., … Sammar, M. (2020). Analytical techniques for multiplex analysis of protein biomarkers. Expert Review of Proteomics, 1–17.
Couté, Y., Kraut, A., Zimmermann, C., Büscher, N., Hesse, A.-M., Bruley, C., De Andrea, M., Wangen, C., Hahn, F., Marschall, M., & Plachter, B. (2020). Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus. Microorganisms, 8(6), 820.
Kloehn, J., Oppenheim, R. D., Siddiqui, G., De Bock, P.-J., Kumar Dogga, S., Coute, Y., Hakimi, M.-A., Creek, D. J., & Soldati-Favre, D. (2020). Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondii. BMC Biology, 18(1), 67.
Hahn, F., Niesar, A., Wangen, C., Wild, M., Grau, B., Herrmann, L., Capci, A., Adrait, A., Couté, Y., Tsogoeva, S. B., & Marschall, M. (2020). Target verification of artesunate-related antiviral drugs: assessing the role of mitochondrial and regulatory proteins by click chemistry and fluorescence labeling. Antiviral Research, 104861.
Takata-Tsuji, F., Chounlamountri, N., Do, L.-D., Philippot, C., Novion Ducassou, J., Couté, Y., Ben Achour, S., Honnorat, J., Place, C., & Pascual, O. (2020). Microglia modulate gliotransmission through the regulation of VAMP2 proteins in astrocytes. Glia.
Roblin, C., Chiumento, S., Bornet, O., Nouailler, M., Müller, C. S., Jeannot, K., Basset, C., Kieffer-Jaquinod, S., Couté, Y., Torelli, S., Le Pape, L., Schünemann, V., Olleik, H., De La Villeon, B., Sockeel, P., Di Pasquale, E., Nicoletti, C., Vidal, N., Poljak, L., … Duarte, V. (2020). The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties. Proceedings of the National Academy of Sciences of the United States of America.
Sansa, M., Defoort, M., Brenac, A., Hermouet, M., Banniard, L., Fafin, A., Gely, M., Masselon, C., Favero, I., Jourdan, G., & Hentz, S. (2020). Optomechanical mass spectrometry. Nature Communications, 11(1), 3781.
Couté, Y., Bruley, C., & Burger, T. (2020). Beyond target-decoy competition: stable validation of peptide and protein identifications in mass spectrometry-based discovery proteomics. Analytical Chemistry.
Del Corpo, D., Fullone, M. R., Miele, R., Lafond, M., Pontiggia, D., Grisel, S., Kieffer‐Jaquinod, S., Giardina, T., Bellincampi, D., & Lionetti, V. (2020). AtPME17 is a functional Arabidopsis thaliana pectin methylesterase regulated by its PRO region that triggers PME activity in the resistance to Botrytis cinerea. Molecular Plant Pathology, mpp.13002.
Adrait, A., Dumonceau, J.-M., Delhaye, M., Annessi-Ramseyer, I., Frossard, J.-L., Coute, Y., & Farina, A. (2020). Liquid Biopsy of Bile based on Targeted Mass Spectrometry for the Diagnosis of Malignant Biliary Strictures. Clinical and Translational Science.
Lamboux, A., Couchonnal-Bedoya, E., Guillaud, O., Laurencin, C., Lion-François, L., Belmalih, A., Mintz, E., Brun, V., Bost, M., Lachaux, A., & Balter, V. (2020). The blood copper isotopic composition is a prognostic indicator of the hepatic injury in Wilson disease. Metallomics: Integrated Biometal Science.
Adhikari, S., Nice, E. C., Deutsch, E. W., Lane, L., Omenn, G. S., Pennington, S. R., Paik, Y.-K., Overall, C. M., Corrales, F. J., Cristea, I. M., Van Eyk, J. E., Uhlén, M., Lindskog, C., Chan, D. W., Bairoch, A., Waddington, J. C., Justice, J. L., LaBaer, J., Rodriguez, H., … Baker, M. S. (2020). A high-stringency blueprint of the human proteome. Nature Communications, 11(1), 5301.
Vandenbrouck, Y., Pineau, C., & Lane, L. (2020). The Functionally Unannotated Proteome of Human Male Tissues: A Shared Resource to Uncover New Protein Functions Associated with Reproductive Biology. Journal of Proteome Research.
Ngo, T.-D., Perdu, C., Jneid, B., Ragno, M., Novion Ducassou, J., Kraut, A., Couté, Y., Stopford, C., Attree, I., Rietsch, A., & Faudry, E. (2020). The PopN gate-keeper complex acts on the ATPase PscN to regulate the T3SS secretion switch from early to middle substrates in Pseudomonas aeruginosa. Journal of Molecular Biology.
Chabrolles, H., Auclair, H., Vegna, S., Lahlali, T., Pons, C., Michelet, M., Couté, Y., Belmudes, L., Chadeuf, G., Kim, Y., Di Bernardo, A., Jalaguier, P., Cosset, F.-L., Fusil, F., Rivoire, M., Arnold, L. D., Lopatin, U., Combet, C., Zoulim, F., … Salvetti, A. (2020). Hepatitis B virus Core protein nuclear interactome identifies SRSF10 as a host RNA-binding protein restricting HBV RNA production. PLoS Pathogens, 16(11), e1008593.