Publications

Publications 2016

Hodille, E., Alekseeva, L., Berkova, N., Serrier, A., Badiou, C., Gilquin, B., … Lina, G. (2016). Staphylococcal Enterotoxin O Exhibits Cell Cycle Modulating Activity. Frontiers in Microbiology, 7, 441. https://doi.org/10.3389/fmicb.2016.00441
Sabra, A., Leiba, J., Mas, L., Louwagie, M., Couté, Y., Journet, A., … Aubry, L. (2016). Pycnosomes: Condensed Endosomal Structures Secreted by Dictyostelium Amoebae. PloS One, 11(5), e0154875. https://doi.org/10.1371/journal.pone.0154875
Garnaud, C., Champleboux, M., Maubon, D., Cornet, M., & Govin, J. (2016). Histone Deacetylases and Their Inhibition in Candida Species. Frontiers in Microbiology, 7, 1238. https://doi.org/10.3389/fmicb.2016.01238
Farina, F., Gaillard, J., Guérin, C., Couté, Y., Sillibourne, J., Blanchoin, L., & Théry, M. (2016). The centrosome is an actin-organizing centre. Nature Cell Biology, 18(1), 65–75. https://doi.org/10.1038/ncb3285
Pinaud, S., Portela, J., Duval, D., Nowacki, F. C., Olive, M.-A., Allienne, J.-F., … Gourbal, B. (2016). A Shift from Cellular to Humoral Responses Contributes to Innate Immune Memory in the Vector Snail Biomphalaria glabrata. PLoS Pathogens, 12(1), e1005361. https://doi.org/10.1371/journal.ppat.1005361
Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Couté, Y., & Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29–32. https://doi.org/10.1002/pmic.201500189
Zatylny-Gaudin, C., Cornet, V., Leduc, A., Zanuttini, B., Corre, E., Le Corguillé, G., … Henry, J. (2016). Neuropeptidome of the Cephalopod Sepia officinalis: Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying. Journal of Proteome Research, 15(1), 48–67. https://doi.org/10.1021/acs.jproteome.5b00463
Ramus, C., Hovasse, A., Marcellin, M., Hesse, A.-M., Mouton-Barbosa, E., Bouyssié, D., … Gonzalez de Peredo, A. (2016). Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset. Journal of Proteomics, 132, 51–62. https://doi.org/10.1016/j.jprot.2015.11.011
Burger, T. (2016). Geometric views on conflicting mass functions: From distances to angles. International Journal of Approximate Reasoning, 70, 36–50. https://doi.org/10.1016/j.ijar.2015.12.006
Michaud, M., Gros, V., Tardif, M., Brugière, S., Ferro, M., Prinz, W. A., … Jouhet, J. (2016). AtMic60 Is Involved in Plant Mitochondria Lipid Trafficking and Is Part of a Large Complex. Current Biology: CB, 26(5), 627–639. https://doi.org/10.1016/j.cub.2016.01.011
Monkkonen, L., Edgar, J. S., Winters, D., Heron, S. R., Mackay, C. L., Masselon, C. D., … Goodlett, D. R. (2016). Screen-printed digital microfluidics combined with surface acoustic wave nebulization for hydrogen-deuterium exchange measurements. Journal of Chromatography. A, 1439, 161–166. https://doi.org/10.1016/j.chroma.2015.12.048
Lazar, C., Gatto, L., Ferro, M., Bruley, C., & Burger, T. (2016). Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies. Journal of Proteome Research, 15(4), 1116–1125. https://doi.org/10.1021/acs.jproteome.5b00981
Ma, S., Martin-Laffon, J., Mininno, M., Gigarel, O., Brugière, S., Bastien, O., … Alban, C. (2016). Molecular Evolution of the Substrate Specificity of Chloroplastic Aldolases/Rubisco Lysine Methyltransferases in Plants. Molecular Plant, 9(4), 569–581. https://doi.org/10.1016/j.molp.2016.01.003
Salvetti, A., Couté, Y., Epstein, A., Arata, L., Kraut, A., Navratil, V., … Greco, A. (2016). Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches. Journal of Proteome Research, 15(5), 1659–1669. https://doi.org/10.1021/acs.jproteome.6b00126
Petropoulos, C., Oddou, C., Emadali, A., Hiriart-Bryant, E., Boyault, C., Faurobert, E., … Destaing, O. (2016). Roles of paxillin family members in adhesion and ECM degradation coupling at invadosomes. The Journal of Cell Biology, 213(5), 585–599. https://doi.org/10.1083/jcb.201510036
Giai Gianetto, Q., Couté, Y., Bruley, C., & Burger, T. (2016). Uses and misuses of the fudge factor in quantitative discovery proteomics. Proteomics, 16(14), 1955–1960. https://doi.org/10.1002/pmic.201600132
Goold, H. D., Cuiné, S., Légeret, B., Liang, Y., Brugière, S., Auroy, P., … Li-Beisson, Y. (2016). Saturating Light Induces Sustained Accumulation of Oil in Plastidal Lipid Droplets in Chlamydomonas reinhardtii. Plant Physiology, 171(4), 2406–2417. https://doi.org/10.1104/pp.16.00718
Tarasova, I. A., Masselon, C. D., Gorshkov, A. V., & Gorshkov, M. V. (2016). Predictive chromatography of peptides and proteins as a complementary tool for proteomics. The Analyst, 141(16), 4816–4832. https://doi.org/10.1039/c6an00919k
Steingruber, M., Kraut, A., Socher, E., Sticht, H., Reichel, A., Stamminger, T., … Marschall, M. (2016). Proteomic Interaction Patterns between Human Cyclins, the Cyclin-Dependent Kinase Ortholog pUL97 and Additional Cytomegalovirus Proteins. Viruses, 8(8). https://doi.org/10.3390/v8080219
Gay, G., Braun, L., Brenier-Pinchart, M.-P., Vollaire, J., Josserand, V., Bertini, R.-L., … Hakimi, M.-A. (2016). Toxoplasma gondii TgIST co-opts host chromatin repressors dampening STAT1-dependent gene regulation and IFN-γ-mediated host defenses. The Journal of Experimental Medicine, 213(9), 1779–1798. https://doi.org/10.1084/jem.20160340
Hesse, A.-M., Dupierris, V., Adam, C., Court, M., Barthe, D., Emadali, A., … Bruley, C. (2016). hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data. Journal of Proteome Research, 15(10), 3896–3903. https://doi.org/10.1021/acs.jproteome.5b00853
Osseni, A., Sébastien, M., Sarrault, O., Baudet, M., Couté, Y., Fauré, J., … Marty, I. (2016). Triadin and CLIMP-63 form a link between triads and microtubules in muscle cells. Journal of Cell Science, 129(20), 3744–3755. https://doi.org/10.1242/jcs.188862
Cerveau, D., Kraut, A., Stotz, H. U., Mueller, M. J., Couté, Y., & Rey, P. (2016). Characterization of the Arabidopsis thaliana 2-Cys peroxiredoxin interactome. Plant Science: An International Journal of Experimental Plant Biology, 252, 30–41. https://doi.org/10.1016/j.plantsci.2016.07.003
Wagner, R., von Sydow, L., Aigner, H., Netotea, S., Brugière, S., Sjögren, L., … Funk, C. (2016). Deletion of FtsH11 protease has impact on chloroplast structure and function in Arabidopsis thaliana when grown under continuous light. Plant, Cell & Environment, 39(11), 2530–2544. https://doi.org/10.1111/pce.12808
Deutsch, E. W., Overall, C. M., Van Eyk, J. E., Baker, M. S., Paik, Y.-K., Weintraub, S. T., … Omenn, G. S. (2016). Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. Journal of Proteome Research, 15(11), 3961–3970. https://doi.org/10.1021/acs.jproteome.6b00392
Vandenbrouck, Y., Lane, L., Carapito, C., Duek, P., Rondel, K., Bruley, C., … Pineau, C. (2016). Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update. Journal of Proteome Research, 15(11), 3998–4019. https://doi.org/10.1021/acs.jproteome.6b00400
Duek, P., Bairoch, A., Gateau, A., Vandenbrouck, Y., & Lane, L. (2016). Missing Protein Landscape of Human Chromosomes 2 and 14: Progress and Current Status. Journal of Proteome Research, 15(11), 3971–3978. https://doi.org/10.1021/acs.jproteome.6b00443
Lee, H., Mun, D.-G., So, J. E., Bae, J., Kim, H., Masselon, C., & Lee, S.-W. (2016). Efficient Exploitation of Separation Space in Two-Dimensional Liquid Chromatography System for Comprehensive and Efficient Proteomic Analyses. Analytical Chemistry, 88(23), 11734–11741. https://doi.org/10.1021/acs.analchem.6b03366