Publications 2016

Hodille, E., Alekseeva, L., Berkova, N., Serrier, A., Badiou, C., Gilquin, B., Brun, V., Vandenesch, F., Terman, D. S., & Lina, G. (2016). Staphylococcal Enterotoxin O Exhibits Cell Cycle Modulating Activity. Frontiers in Microbiology, 7, 441.
Sabra, A., Leiba, J., Mas, L., Louwagie, M., Couté, Y., Journet, A., Cosson, P., & Aubry, L. (2016). Pycnosomes: Condensed Endosomal Structures Secreted by Dictyostelium Amoebae. PloS One, 11(5), e0154875.
Garnaud, C., Champleboux, M., Maubon, D., Cornet, M., & Govin, J. (2016). Histone Deacetylases and Their Inhibition in Candida Species. Frontiers in Microbiology, 7, 1238.
Farina, F., Gaillard, J., Guérin, C., Couté, Y., Sillibourne, J., Blanchoin, L., & Théry, M. (2016). The centrosome is an actin-organizing centre. Nature Cell Biology, 18(1), 65–75.
Pinaud, S., Portela, J., Duval, D., Nowacki, F. C., Olive, M.-A., Allienne, J.-F., Galinier, R., Dheilly, N. M., Kieffer-Jaquinod, S., Mitta, G., Théron, A., & Gourbal, B. (2016). A Shift from Cellular to Humoral Responses Contributes to Innate Immune Memory in the Vector Snail Biomphalaria glabrata. PLoS Pathogens, 12(1), e1005361.
Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Couté, Y., & Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29–32.
Zatylny-Gaudin, C., Cornet, V., Leduc, A., Zanuttini, B., Corre, E., Le Corguillé, G., Bernay, B., Garderes, J., Kraut, A., Couté, Y., & Henry, J. (2016). Neuropeptidome of the Cephalopod Sepia officinalis: Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying. Journal of Proteome Research, 15(1), 48–67.
Ramus, C., Hovasse, A., Marcellin, M., Hesse, A.-M., Mouton-Barbosa, E., Bouyssié, D., Vaca, S., Carapito, C., Chaoui, K., Bruley, C., Garin, J., Cianférani, S., Ferro, M., Van Dorssaeler, A., Burlet-Schiltz, O., Schaeffer, C., Couté, Y., & Gonzalez de Peredo, A. (2016). Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset. Journal of Proteomics, 132, 51–62.
Burger, T. (2016). Geometric views on conflicting mass functions: From distances to angles. International Journal of Approximate Reasoning, 70, 36–50.
Michaud, M., Gros, V., Tardif, M., Brugière, S., Ferro, M., Prinz, W. A., Toulmay, A., Mathur, J., Wozny, M., Falconet, D., Maréchal, E., Block, M. A., & Jouhet, J. (2016). AtMic60 Is Involved in Plant Mitochondria Lipid Trafficking and Is Part of a Large Complex. Current Biology: CB, 26(5), 627–639.
Monkkonen, L., Edgar, J. S., Winters, D., Heron, S. R., Mackay, C. L., Masselon, C. D., Stokes, A. A., Langridge-Smith, P. R. R., & Goodlett, D. R. (2016). Screen-printed digital microfluidics combined with surface acoustic wave nebulization for hydrogen-deuterium exchange measurements. Journal of Chromatography. A, 1439, 161–166.
Lazar, C., Gatto, L., Ferro, M., Bruley, C., & Burger, T. (2016). Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies. Journal of Proteome Research, 15(4), 1116–1125.
Ma, S., Martin-Laffon, J., Mininno, M., Gigarel, O., Brugière, S., Bastien, O., Tardif, M., Ravanel, S., & Alban, C. (2016). Molecular Evolution of the Substrate Specificity of Chloroplastic Aldolases/Rubisco Lysine Methyltransferases in Plants. Molecular Plant, 9(4), 569–581.
Salvetti, A., Couté, Y., Epstein, A., Arata, L., Kraut, A., Navratil, V., Bouvet, P., & Greco, A. (2016). Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches. Journal of Proteome Research, 15(5), 1659–1669.
Petropoulos, C., Oddou, C., Emadali, A., Hiriart-Bryant, E., Boyault, C., Faurobert, E., Vande Pol, S., Kim-Kaneyama, J.-R., Kraut, A., Coute, Y., Block, M., Albiges-Rizo, C., & Destaing, O. (2016). Roles of paxillin family members in adhesion and ECM degradation coupling at invadosomes. The Journal of Cell Biology, 213(5), 585–599.
Giai Gianetto, Q., Couté, Y., Bruley, C., & Burger, T. (2016). Uses and misuses of the fudge factor in quantitative discovery proteomics. Proteomics, 16(14), 1955–1960.
Goold, H. D., Cuiné, S., Légeret, B., Liang, Y., Brugière, S., Auroy, P., Javot, H., Tardif, M., Jones, B., Beisson, F., Peltier, G., & Li-Beisson, Y. (2016). Saturating Light Induces Sustained Accumulation of Oil in Plastidal Lipid Droplets in Chlamydomonas reinhardtii. Plant Physiology, 171(4), 2406–2417.
Tarasova, I. A., Masselon, C. D., Gorshkov, A. V., & Gorshkov, M. V. (2016). Predictive chromatography of peptides and proteins as a complementary tool for proteomics. The Analyst, 141(16), 4816–4832.
Steingruber, M., Kraut, A., Socher, E., Sticht, H., Reichel, A., Stamminger, T., Amin, B., Couté, Y., Hutterer, C., & Marschall, M. (2016). Proteomic Interaction Patterns between Human Cyclins, the Cyclin-Dependent Kinase Ortholog pUL97 and Additional Cytomegalovirus Proteins. Viruses, 8(8).
Gay, G., Braun, L., Brenier-Pinchart, M.-P., Vollaire, J., Josserand, V., Bertini, R.-L., Varesano, A., Touquet, B., De Bock, P.-J., Coute, Y., Tardieux, I., Bougdour, A., & Hakimi, M.-A. (2016). Toxoplasma gondii TgIST co-opts host chromatin repressors dampening STAT1-dependent gene regulation and IFN-γ-mediated host defenses. The Journal of Experimental Medicine, 213(9), 1779–1798.
Hesse, A.-M., Dupierris, V., Adam, C., Court, M., Barthe, D., Emadali, A., Masselon, C., Ferro, M., & Bruley, C. (2016). hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data. Journal of Proteome Research, 15(10), 3896–3903.
Osseni, A., Sébastien, M., Sarrault, O., Baudet, M., Couté, Y., Fauré, J., Fourest-Lieuvin, A., & Marty, I. (2016). Triadin and CLIMP-63 form a link between triads and microtubules in muscle cells. Journal of Cell Science, 129(20), 3744–3755.
Cerveau, D., Kraut, A., Stotz, H. U., Mueller, M. J., Couté, Y., & Rey, P. (2016). Characterization of the Arabidopsis thaliana 2-Cys peroxiredoxin interactome. Plant Science: An International Journal of Experimental Plant Biology, 252, 30–41.
Wagner, R., von Sydow, L., Aigner, H., Netotea, S., Brugière, S., Sjögren, L., Ferro, M., Clarke, A., & Funk, C. (2016). Deletion of FtsH11 protease has impact on chloroplast structure and function in Arabidopsis thaliana when grown under continuous light. Plant, Cell & Environment, 39(11), 2530–2544.
Deutsch, E. W., Overall, C. M., Van Eyk, J. E., Baker, M. S., Paik, Y.-K., Weintraub, S. T., Lane, L., Martens, L., Vandenbrouck, Y., Kusebauch, U., Hancock, W. S., Hermjakob, H., Aebersold, R., Moritz, R. L., & Omenn, G. S. (2016). Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. Journal of Proteome Research, 15(11), 3961–3970.
Vandenbrouck, Y., Lane, L., Carapito, C., Duek, P., Rondel, K., Bruley, C., Macron, C., Gonzalez de Peredo, A., Couté, Y., Chaoui, K., Com, E., Gateau, A., Hesse, A.-M., Marcellin, M., Méar, L., Mouton-Barbosa, E., Robin, T., Burlet-Schiltz, O., Cianferani, S., … Pineau, C. (2016). Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update. Journal of Proteome Research, 15(11), 3998–4019.
Duek, P., Bairoch, A., Gateau, A., Vandenbrouck, Y., & Lane, L. (2016). Missing Protein Landscape of Human Chromosomes 2 and 14: Progress and Current Status. Journal of Proteome Research, 15(11), 3971–3978.
Lee, H., Mun, D.-G., So, J. E., Bae, J., Kim, H., Masselon, C., & Lee, S.-W. (2016). Efficient Exploitation of Separation Space in Two-Dimensional Liquid Chromatography System for Comprehensive and Efficient Proteomic Analyses. Analytical Chemistry, 88(23), 11734–11741.