Publications

Publications 2017

El Kennani, S., Adrait, A., Shaytan, A. K., Khochbin, S., Bruley, C., Panchenko, A. R., … Govin, J. (2017). MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones. Epigenetics & Chromatin, 10, 2. https://doi.org/10.1186/s13072-016-0109-x
Alfieri, A., Sorokina, O., Adrait, A., Angelini, C., Russo, I., Morellato, A., … Defilippi, P. (2017). Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders. Frontiers in Molecular Neuroscience, 10, 212. https://doi.org/10.3389/fnmol.2017.00212
Vizcaíno, J. A., Walzer, M., Jiménez, R. C., Bittremieux, W., Bouyssié, D., Carapito, C., … Kohlbacher, O. (2017). A community proposal to integrate proteomics activities in ELIXIR. F1000Research, 6. https://doi.org/10.12688/f1000research.11751.1
Boruc, J., Weimer, A. K., Stoppin-Mellet, V., Mylle, E., Kosetsu, K., Cedeño, C., … Van Damme, D. (2017). Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression. Plant Physiology, 173(1), 582–599. https://doi.org/10.1104/pp.16.01602
García-Oliver, E., Ramus, C., Perot, J., Arlotto, M., Champleboux, M., Mietton, F., … Govin, J. (2017). Bdf1 Bromodomains Are Essential for Meiosis and the Expression of Meiotic-Specific Genes. PLoS Genetics, 13(1), e1006541. https://doi.org/10.1371/journal.pgen.1006541
Gilquin, B., Jaquinod, M., Louwagie, M., Kieffer-Jaquinod, S., Kraut, A., Ferro, M., … Brun, V. (2017). A proteomics assay to detect eight CBRN-relevant toxins in food. Proteomics, 17(1–2). https://doi.org/10.1002/pmic.201600357
Wieczorek, S., Combes, F., Lazar, C., Giai Gianetto, Q., Gatto, L., Dorffer, A., … Burger, T. (2017). DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics. Bioinformatics (Oxford, England), 33(1), 135–136. https://doi.org/10.1093/bioinformatics/btw580
Do, L.-D., Chanson, E., Desestret, V., Joubert, B., Ducray, F., Brugière, S., … Honnorat, J. (2017). Characteristics in limbic encephalitis with anti-adenylate kinase 5 autoantibodies. Neurology, 88(6), 514–524. https://doi.org/10.1212/WNL.0000000000003586
van Lis, R., Popek, M., Couté, Y., Kosta, A., Drapier, D., Nitschke, W., & Atteia, A. (2017). Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia. The Journal of Biological Chemistry, 292(6), 2395–2410. https://doi.org/10.1074/jbc.M116.766048
Gilquin, B., Louwagie, M., Jaquinod, M., Cez, A., Picard, G., El Kholy, L., … Brun, V. (2017). Multiplex and accurate quantification of acute kidney injury biomarker candidates in urine using Protein Standard Absolute Quantification (PSAQ) and targeted proteomics. Talanta, 164, 77–84. https://doi.org/10.1016/j.talanta.2016.11.023
Barral, S., Morozumi, Y., Tanaka, H., Montellier, E., Govin, J., de Dieuleveult, M., … Khochbin, S. (2017). Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells. Molecular Cell, 66(1), 89-101.e8. https://doi.org/10.1016/j.molcel.2017.02.025
Duriez, E., Masselon, C. D., Mesmin, C., Court, M., Demeure, K., Allory, Y., … Domon, B. (2017). Large-Scale SRM Screen of Urothelial Bladder Cancer Candidate Biomarkers in Urine. Journal of Proteome Research, 16(4), 1617–1631. https://doi.org/10.1021/acs.jproteome.6b00979
Fabre, E., Jeudy, S., Santini, S., Legendre, M., Trauchessec, M., Couté, Y., … Abergel, C. (2017). Noumeavirus replication relies on a transient remote control of the host nucleus. Nature Communications, 8, 15087. https://doi.org/10.1038/ncomms15087
Mietton, F., Ferri, E., Champleboux, M., Zala, N., Maubon, D., Zhou, Y., … Petosa, C. (2017). Selective BET bromodomain inhibition as an antifungal therapeutic strategy. Nature Communications, 8, 15482. https://doi.org/10.1038/ncomms15482
Gloaguen, P., Bournais, S., Alban, C., Ravanel, S., Seigneurin-Berny, D., Matringe, M., … Curien, G. (2017). ChloroKB: A Web Application for the Integration of Knowledge Related to Chloroplast Metabolic Network. Plant Physiology, 174(2), 922–934. https://doi.org/10.1104/pp.17.00242
Tarasova, I. A., Masselon, C. D., Gorshkov, A. V., & Gorshkov, M. V. (2017). Reply to “Comparison of peptide retention prediction algorithm in reversed-phase chromatography. Comment on ‘Predictive chromatography of peptides and proteins as a complementary tool for proteomics’”, by O. V. Krokhin, Analyst, 2017, 142, DOI: 10.1039/c6an02510b. The Analyst, 142(11), 2052–2053. https://doi.org/10.1039/c7an00627f
Bartoli, J., My, L., Belmudes, L., Couté, Y., Viala, J. P., & Bouveret, E. (2017). The Long Hunt for pssR-Looking for a Phospholipid Synthesis Transcriptional Regulator, Finding the Ribosome. Journal of Bacteriology, 199(14). https://doi.org/10.1128/JB.00202-17
Maes, P., Donadio-Andréi, S., Louwagie, M., Couté, Y., Picard, G., Lacoste, C., … Brun, V. (2017). Introducing plasma/serum glycodepletion for the targeted proteomics analysis of cytolysis biomarkers. Talanta, 170, 473–480. https://doi.org/10.1016/j.talanta.2017.04.042
Sorigué, D., Légeret, B., Cuiné, S., Blangy, S., Moulin, S., Billon, E., … Beisson, F. (2017). An algal photoenzyme converts fatty acids to hydrocarbons. Science (New York, N.Y.), 357(6354), 903–907. https://doi.org/10.1126/science.aan6349
Carapito, C., Duek, P., Macron, C., Seffals, M., Rondel, K., Delalande, F., … Pineau, C. (2017). Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.7b00374
Sonntag, E., Milbradt, J., Svrlanska, A., Strojan, H., Häge, S., Kraut, A., … Marschall, M. (2017). Protein kinases responsible for the phosphorylation of the nuclear egress core complex of human cytomegalovirus. The Journal of General Virology, 98(10), 2569–2581. https://doi.org/10.1099/jgv.0.000931
Sindikubwabo, F., Ding, S., Hussain, T., Ortet, P., Barakat, M., Baumgarten, S., … Hakimi, M.-A. (2017). Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites. ELife, 6. https://doi.org/10.7554/eLife.29391
Aillaud, C., Bosc, C., Peris, L., Bosson, A., Heemeryck, P., Van Dijk, J., … Moutin, M.-J. (2017). Vasohibins/SVBP are tubulin carboxypeptidases (TCP) that regulate neuron differentiation. Science (New York, N.Y.). https://doi.org/10.1126/science.aao4165
Beaumel, S., Picciocchi, A., Debeurme, F., Vivès, C., Hesse, A.-M., Ferro, M., … Stasia, M. J. (2017). Down-regulation of NOX2 activity in phagocytes mediated by ATM-kinase dependent phosphorylation. Free Radical Biology & Medicine, 113, 1–15. https://doi.org/10.1016/j.freeradbiomed.2017.09.007
Erales, J., Marchand, V., Panthu, B., Gillot, S., Belin, S., Ghayad, S. E., … Diaz, J.-J. (2017). Evidence for rRNA 2’-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes. Proceedings of the National Academy of Sciences of the United States of America, 114(49), 12934–12939. https://doi.org/10.1073/pnas.1707674114
Arvin-Berod, M., Desroches-Castan, A., Bonte, S., Brugière, S., Couté, Y., Guyon, L., … Demeunynck, M. (2017). Indolizine-Based Scaffolds as Efficient and Versatile Tools: Application to the Synthesis of Biotin-Tagged Antiangiogenic Drugs. ACS Omega, 2(12), 9221–9230. https://doi.org/10.1021/acsomega.7b01184