Publications 2023

Svahn, J., Coudert, L., Streichenberger, N., Kraut, A., Gravier-Dumonceau-Mazelier, A., Rotard, L., Calemard-Michel, L., Menassa, R., Errazuriz-Cerda, E., Chalabreysse, L., Osseni, A., Vial, C., Jomir, L., Tronc, F., Le Duy, D., Bernard, E., Gache, V., Couté, Y., Jacquemond, V., … Leblanc, P. (2023). Immune-Mediated Rippling Muscle Disease Associated With Thymoma and Anti-MURC/Cavin-4 Autoantibodies. Neurology(R) Neuroimmunology & Neuroinflammation, 10(1), e200068.
Dupierris, V., Hesse, A.-M., Menetrey, J.-P., Bouyssié, D., Burger, T., Couté, Y., & Bruley, C. (2023). Validation of MS/MS Identifications and Label-Free Quantification Using Proline. Methods in Molecular Biology (Clifton, N.J.), 2426, 67–89.
Tardif, M., Fremy, E., Hesse, A.-M., Burger, T., Couté, Y., & Wieczorek, S. (2023). Statistical Analysis of Quantitative Peptidomics and Peptide-Level Proteomics Data with Prostar. Methods in Molecular Biology (Clifton, N.J.), 2426, 163–196.
Etourneau, L., Varoquaux, N., & Burger, T. (2023). Unveiling the Links Between Peptide Identification and Differential Analysis FDR Controls by Means of a Practical Introduction to Knockoff Filters. Methods in Molecular Biology (Clifton, N.J.), 2426, 1–24.
da Silva Barreira, D., Laurent, J., Lourenço, J., Novion Ducassou, J., Couté, Y., Guzzo, J., & Rieu, A. (2023). Membrane vesicles released by Lacticaseibacillus casei BL23 inhibit the biofilm formation of Salmonella Enteritidis. Scientific Reports, 13(1), 1163.
Durand, S., Bruelle, M., Bourdelais, F., Bennychen, B., Blin-Gonthier, J., Isaac, C., Huyghe, A., Martel, S., Seyve, A., Vanbelle, C., Adrait, A., Couté, Y., Meyronet, D., Catez, F., Diaz, J.-J., Lavial, F., Ricci, E. P., Ducray, F., & Gabut, M. (2023). RSL24D1 sustains steady-state ribosome biogenesis and pluripotency translational programs in embryonic stem cells. Nature Communications, 14(1), 356.
Bodnar-Wachtel, M., Huber, A.-L., Gorry, J., Hacot, S., Burlet, D., Gérossier, L., Guey, B., Goutagny, N., Bartosch, B., Ballot, E., Lecuelle, J., Truntzer, C., Ghiringhelli, F., Py, B. F., Couté, Y., Ballesta, A., Lantuejoul, S., Hall, J., Tissier, A., & Petrilli, V. (2023). Inflammasome-independent NLRP3 function enforces ATM activity in response to genotoxic stress. Life Science Alliance, 6(4), e202201494.
Blanco, M., El Khattabi, L., Gobé, C., Crespo, M., Coulée, M., de la Iglesia, A., Ialy-Radio, C., Lapoujade, C., Givelet, M., Delessard, M., Seller-Corona, I., Yamaguchi, K., Vernet, N., Van Leeuwen, F., Lermine, A., Okada, Y., Daveau, R., Oliva, R., Fouchet, P., … Cocquet, J. (2023). DOT1L regulates chromatin reorganization and gene expression during sperm differentiation. EMBO Reports, 24(6), e56316.
Zhamungui Sánchez, E., Hijazi, H., Haidar, J., Mecarelli, E., Bauda, E., Petit-Härtlein, I., Teulon, J.-M., Pellequer, J.-L., & Boeri Erba, E. (2023). Sequencing intact membrane proteins using MALDI mass spectrometry. Frontiers in Analytical Science, 3, 1124741.
Dushime, H., Moreno, S. G., Linard, C., Adrait, A., Couté, Y., Peltzer, J., Messiaen, S., Torres, C., Bensemmane, L., Lewandowski, D., Romeo, P.-H., Petit, V., & Gault, N. (2023). Fetal Muse-based therapy prevents lethal radio-induced gastrointestinal syndrome by intestinal regeneration. Stem Cell Research & Therapy, 14(1), 201.
Pivard, M., Caldelari, I., Brun, V., Croisier, D., Jaquinod, M., Anzala, N., Gilquin, B., Teixeira, C., Benito, Y., Couzon, F., Romby, P., Moreau, K., & Vandenesch, F. (2023). Complex Regulation of Gamma-Hemolysin Expression Impacts Staphylococcus aureus Virulence. Microbiology Spectrum, 11(4), e0107323.
Shamseddine, L., Roblin, C., Veyrier, I., Basset, C., De Macedo, L., Boyeldieu, A., Maresca, M., Nicoletti, C., Brasseur, G., Kieffer-Jaquinod, S., Courvoisier-Dezord, É., Amouric, A., Carpentier, P., Campo, N., Bergé, M., Polard, P., Perrier, J., Duarte, V., & Lafond, M. (2023). Mechanistic and functional aspects of the Ruminococcin C sactipeptide isoforms. IScience, 26(9), 107563.
Burger, T. (2023). Controlling for false discoveries subsequently to large scale one-way ANOVA testing in proteomics: Practical considerations. Proteomics, 23(18), e2200406.
Iuso, D., Garcia-Saez, I., Couté, Y., Yamaryo-Botté, Y., Boeri Erba, E., Adrait, A., Zeaiter, N., Tokarska-Schlattner, M., Jilkova, Z. M., Boussouar, F., Barral, S., Signor, L., Couturier, K., Hajmirza, A., Chuffart, F., Bourova-Flin, E., Vitte, A.-L., Bargier, L., Puthier, D., … Khochbin, S. (2023). Nucleoside diphosphate kinases 1 and 2 regulate a protective liver response to a high-fat diet. Science Advances, 9(36), eadh0140.
Marziali, F., Song, Y., Nguyen, X.-N., Belmudes, L., Burlaud-Gaillard, J., Roingeard, P., Couté, Y., & Cimarelli, A. (2023). A Proteomics-Based Approach Identifies the NEDD4 Adaptor NDFIP2 as an Important Regulator of Ifitm3 Levels. Viruses, 15(10), 1993.
Kairouani, A., Pontier, D., Picart, C., Mounet, F., Martinez, Y., Le-Bot, L., Fanuel, M., Hammann, P., Belmudes, L., Merret, R., Azevedo, J., Carpentier, M.-C., Gagliardi, D., Couté, Y., Sibout, R., Bies-Etheve, N., & Lagrange, T. (2023). Cell-type-specific control of secondary cell wall formation by Musashi-type translational regulators in Arabidopsis. ELife, 12, RP88207.
Reynaud, A., Trzpil, W., Dartiguelongue, L., Çumaku, V., Fortin, T., Sansa, M., Hentz, S., & Masselon, C. (2023). Compact and modular system architecture for a nano-resonator-mass spectrometer. Frontiers in Chemistry, 11, 1238674.
Raisch, J., Dubois, M.-L., Groleau, M., Lévesque, D., Burger, T., Jurkovic, C.-M., Brailly, R., Marbach, G., McKenna, A., Barrette, C., Jacques, P.-É., & Boisvert, F.-M. (2023). Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4-Associated Factors, Cellular Functions, and Protein Substrates. Molecular & Cellular Proteomics: MCP, 22(10), 100644.
Robert, V. J., Caron, M., Gely, L., Adrait, A., Pakulska, V., Couté, Y., Chevalier, M., Riedel, C. G., Bedet, C., & Palladino, F. (2023). SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Development (Cambridge, England), 150(21), dev201755.
Lavrut, P.-M., Guillaud, O., Dumortier, J., Mintz, E., Brun, V., Heissat, S., Couchonnal Bedoya, E., Lachaux, A., Bost, M., & Hervieu, V. (2023). Histological features of liver disease development in the Atp7b-/- mouse: a model of Wilson’s disease. Journal of Clinical Pathology, jcp-2023-209190.
Zafirov, D., Giovinazzo, N., Lecampion, C., Field, B., Ducassou, J. N., Couté, Y., Browning, K. S., Robaglia, C., & Gallois, J.-L. (2023). Arabidopsis eIF4E1 protects the translational machinery during TuMV infection and restricts virus accumulation. PLoS Pathogens, 19(11), e1011417.
Huna, A., Flaman, J.-M., Lodillinsky, C., Zhu, K., Makulyte, G., Pakulska, V., Coute, Y., Ruisseaux, C., Saintigny, P., Hernandez-Vargas, H., Defossez, P.-A., Boissan, M., Martin, N., & Bernard, D. (2023). RSK3 switches cell fate: from stress-induced senescence to malignant progression. Journal of Experimental & Clinical Cancer Research: CR, 42(1), 318.