El Kennani, S., Adrait, A., Shaytan, A. K., Khochbin, S., Bruley, C., Panchenko, A. R., Landsman, D., Pflieger, D., & Govin, J. (2017). MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones. Epigenetics & Chromatin, 10, 2. https://doi.org/10.1186/s13072-016-0109-x

Alfieri, A., Sorokina, O., Adrait, A., Angelini, C., Russo, I., Morellato, A., Matteoli, M., Menna, E., Boeri Erba, E., McLean, C., Armstrong, J. D., Ala, U., Buxbaum, J. D., Brusco, A., Couté, Y., De Rubeis, S., Turco, E., & Defilippi, P. (2017). Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders. Frontiers in Molecular Neuroscience, 10, 212. https://doi.org/10.3389/fnmol.2017.00212

Vizcaíno, J. A., Walzer, M., Jiménez, R. C., Bittremieux, W., Bouyssié, D., Carapito, C., Corrales, F., Ferro, M., Heck, A. J. R., Horvatovich, P., Hubalek, M., Lane, L., Laukens, K., Levander, F., Lisacek, F., Novak, P., Palmblad, M., Piovesan, D., Pühler, A., … Kohlbacher, O. (2017). A community proposal to integrate proteomics activities in ELIXIR. F1000Research, 6. https://doi.org/10.12688/f1000research.11751.1

Boruc, J., Weimer, A. K., Stoppin-Mellet, V., Mylle, E., Kosetsu, K., Cedeño, C., Jaquinod, M., Njo, M., De Milde, L., Tompa, P., Gonzalez, N., Inzé, D., Beeckman, T., Vantard, M., & Van Damme, D. (2017). Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression. Plant Physiology, 173(1), 582–599. https://doi.org/10.1104/pp.16.01602

García-Oliver, E., Ramus, C., Perot, J., Arlotto, M., Champleboux, M., Mietton, F., Battail, C., Boland, A., Deleuze, J.-F., Ferro, M., Couté, Y., & Govin, J. (2017). Bdf1 Bromodomains Are Essential for Meiosis and the Expression of Meiotic-Specific Genes. PLoS Genetics, 13(1), e1006541. https://doi.org/10.1371/journal.pgen.1006541

Gilquin, B., Jaquinod, M., Louwagie, M., Kieffer-Jaquinod, S., Kraut, A., Ferro, M., Becher, F., & Brun, V. (2017). A proteomics assay to detect eight CBRN-relevant toxins in food. Proteomics, 17(1–2). https://doi.org/10.1002/pmic.201600357

Wieczorek, S., Combes, F., Lazar, C., Giai Gianetto, Q., Gatto, L., Dorffer, A., Hesse, A.-M., Couté, Y., Ferro, M., Bruley, C., & Burger, T. (2017). DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics. Bioinformatics (Oxford, England), 33(1), 135–136. https://doi.org/10.1093/bioinformatics/btw580

Do, L.-D., Chanson, E., Desestret, V., Joubert, B., Ducray, F., Brugière, S., Couté, Y., Formaglio, M., Rogemond, V., Thomas-Antérion, C., Borrega, L., Laurens, B., Tison, F., Curot, J., De Brouker, T., Lebrun-Frenay, C., Delattre, J.-Y., Antoine, J.-C., & Honnorat, J. (2017). Characteristics in limbic encephalitis with anti-adenylate kinase 5 autoantibodies. Neurology, 88(6), 514–524. https://doi.org/10.1212/WNL.0000000000003586

van Lis, R., Popek, M., Couté, Y., Kosta, A., Drapier, D., Nitschke, W., & Atteia, A. (2017). Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia. The Journal of Biological Chemistry, 292(6), 2395–2410. https://doi.org/10.1074/jbc.M116.766048

Gilquin, B., Louwagie, M., Jaquinod, M., Cez, A., Picard, G., El Kholy, L., Surin, B., Garin, J., Ferro, M., Kofman, T., Barau, C., Plaisier, E., Ronco, P., & Brun, V. (2017). Multiplex and accurate quantification of acute kidney injury biomarker candidates in urine using Protein Standard Absolute Quantification (PSAQ) and targeted proteomics. Talanta, 164, 77–84. https://doi.org/10.1016/j.talanta.2016.11.023

Barral, S., Morozumi, Y., Tanaka, H., Montellier, E., Govin, J., de Dieuleveult, M., Charbonnier, G., Couté, Y., Puthier, D., Buchou, T., Boussouar, F., Urahama, T., Fenaille, F., Curtet, S., Héry, P., Fernandez-Nunez, N., Shiota, H., Gérard, M., Rousseaux, S., … Khochbin, S. (2017). Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells. Molecular Cell, 66(1), 89-101.e8. https://doi.org/10.1016/j.molcel.2017.02.025

Duriez, E., Masselon, C. D., Mesmin, C., Court, M., Demeure, K., Allory, Y., Malats, N., Matondo, M., Radvanyi, F., Garin, J., & Domon, B. (2017). Large-Scale SRM Screen of Urothelial Bladder Cancer Candidate Biomarkers in Urine. Journal of Proteome Research, 16(4), 1617–1631. https://doi.org/10.1021/acs.jproteome.6b00979

Fabre, E., Jeudy, S., Santini, S., Legendre, M., Trauchessec, M., Couté, Y., Claverie, J.-M., & Abergel, C. (2017). Noumeavirus replication relies on a transient remote control of the host nucleus. Nature Communications, 8, 15087. https://doi.org/10.1038/ncomms15087

Mietton, F., Ferri, E., Champleboux, M., Zala, N., Maubon, D., Zhou, Y., Harbut, M., Spittler, D., Garnaud, C., Courçon, M., Chauvel, M., d’Enfert, C., Kashemirov, B. A., Hull, M., Cornet, M., McKenna, C. E., Govin, J., & Petosa, C. (2017). Selective BET bromodomain inhibition as an antifungal therapeutic strategy. Nature Communications, 8, 15482. https://doi.org/10.1038/ncomms15482

Gloaguen, P., Bournais, S., Alban, C., Ravanel, S., Seigneurin-Berny, D., Matringe, M., Tardif, M., Kuntz, M., Ferro, M., Bruley, C., Rolland, N., Vandenbrouck, Y., & Curien, G. (2017). ChloroKB: A Web Application for the Integration of Knowledge Related to Chloroplast Metabolic Network. Plant Physiology, 174(2), 922–934. https://doi.org/10.1104/pp.17.00242

Tarasova, I. A., Masselon, C. D., Gorshkov, A. V., & Gorshkov, M. V. (2017). Reply to “Comparison of peptide retention prediction algorithm in reversed-phase chromatography. Comment on ‘Predictive chromatography of peptides and proteins as a complementary tool for proteomics’”, by O. V. Krokhin, Analyst, 2017, 142, DOI: 10.1039/c6an02510b. The Analyst, 142(11), 2052–2053. https://doi.org/10.1039/c7an00627f

Bartoli, J., My, L., Belmudes, L., Couté, Y., Viala, J. P., & Bouveret, E. (2017). The Long Hunt for pssR-Looking for a Phospholipid Synthesis Transcriptional Regulator, Finding the Ribosome. Journal of Bacteriology, 199(14). https://doi.org/10.1128/JB.00202-17

Maes, P., Donadio-Andréi, S., Louwagie, M., Couté, Y., Picard, G., Lacoste, C., Bruley, C., Garin, J., Ichai, P., Faivre, J., Jaquinod, M., & Brun, V. (2017). Introducing plasma/serum glycodepletion for the targeted proteomics analysis of cytolysis biomarkers. Talanta, 170, 473–480. https://doi.org/10.1016/j.talanta.2017.04.042

Sorigué, D., Légeret, B., Cuiné, S., Blangy, S., Moulin, S., Billon, E., Richaud, P., Brugière, S., Couté, Y., Nurizzo, D., Müller, P., Brettel, K., Pignol, D., Arnoux, P., Li-Beisson, Y., Peltier, G., & Beisson, F. (2017). An algal photoenzyme converts fatty acids to hydrocarbons. Science (New York, N.Y.), 357(6354), 903–907. https://doi.org/10.1126/science.aan6349

Carapito, C., Duek, P., Macron, C., Seffals, M., Rondel, K., Delalande, F., Lindskog, C., Fréour, T., Vandenbrouck, Y., Lane, L., & Pineau, C. (2017). Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.7b00374

Sonntag, E., Milbradt, J., Svrlanska, A., Strojan, H., Häge, S., Kraut, A., Hesse, A.-M., Amin, B., Sonnewald, U., Couté, Y., & Marschall, M. (2017). Protein kinases responsible for the phosphorylation of the nuclear egress core complex of human cytomegalovirus. The Journal of General Virology, 98(10), 2569–2581. https://doi.org/10.1099/jgv.0.000931

Sindikubwabo, F., Ding, S., Hussain, T., Ortet, P., Barakat, M., Baumgarten, S., Cannella, D., Palencia, A., Bougdour, A., Belmudes, L., Couté, Y., Tardieux, I., Botté, C. Y., Scherf, A., & Hakimi, M.-A. (2017). Modifications at K31 on the lateral surface of histone H4 contribute to genome structure and expression in apicomplexan parasites. ELife, 6. https://doi.org/10.7554/eLife.29391

Aillaud, C., Bosc, C., Peris, L., Bosson, A., Heemeryck, P., Van Dijk, J., Le Friec, J., Boulan, B., Vossier, F., Sanman, L. E., Syed, S., Amara, N., Couté, Y., Lafanechère, L., Denarier, E., Delphin, C., Pelletier, L., Humbert, S., Bogyo, M., … Moutin, M.-J. (2017). Vasohibins/SVBP are tubulin carboxypeptidases (TCP) that regulate neuron differentiation. Science (New York, N.Y.). https://doi.org/10.1126/science.aao4165

Beaumel, S., Picciocchi, A., Debeurme, F., Vivès, C., Hesse, A.-M., Ferro, M., Grunwald, D., Stieglitz, H., Thepchatri, P., Smith, S. M. E., Fieschi, F., & Stasia, M. J. (2017). Down-regulation of NOX2 activity in phagocytes mediated by ATM-kinase dependent phosphorylation. Free Radical Biology & Medicine, 113, 1–15. https://doi.org/10.1016/j.freeradbiomed.2017.09.007

Erales, J., Marchand, V., Panthu, B., Gillot, S., Belin, S., Ghayad, S. E., Garcia, M., Laforêts, F., Marcel, V., Baudin-Baillieu, A., Bertin, P., Couté, Y., Adrait, A., Meyer, M., Therizols, G., Yusupov, M., Namy, O., Ohlmann, T., Motorin, Y., … Diaz, J.-J. (2017). Evidence for rRNA 2’-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes. Proceedings of the National Academy of Sciences of the United States of America, 114(49), 12934–12939. https://doi.org/10.1073/pnas.1707674114

Arvin-Berod, M., Desroches-Castan, A., Bonte, S., Brugière, S., Couté, Y., Guyon, L., Feige, J.-J., Baussanne, I., & Demeunynck, M. (2017). Indolizine-Based Scaffolds as Efficient and Versatile Tools: Application to the Synthesis of Biotin-Tagged Antiangiogenic Drugs. ACS Omega, 2(12), 9221–9230. https://doi.org/10.1021/acsomega.7b01184