Publications

Publications 2020

Began, J., Cordier, B., Březinová, J., Delisle, J., Hexnerová, R., Srb, P., Rampírová, P., Kožíšek, M., Baudet, M., Couté, Y., Galinier, A., Veverka, V., Doan, T., & Strisovsky, K. (2020). Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease. The EMBO Journal. https://doi.org/10.15252/embj.2019102935
Lezzerini, M., Penzo, M., O’Donohue, M.-F., Marques Dos Santos Vieira, C., Saby, M., Elfrink, H. L., Diets, I. J., Hesse, A.-M., Couté, Y., Gastou, M., Nin-Velez, A., Nikkels, P. G. J., Olson, A. N., Zonneveld-Huijssoon, E., Jongmans, M. C. J., Zhang, G., van Weeghel, M., Houtkooper, R. H., Wlodarski, M. W., … MacInnes, A. W. (2020). Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism. Nucleic Acids Research, 48(2), 770–787. https://doi.org/10.1093/nar/gkz1042
van Lis, R., Brugière, S., Baffert, C., Couté, Y., Nitschke, W., & Atteia, A. (2020). Hybrid cluster proteins in a photosynthetic microalga. The FEBS Journal, 287(4), 721–735. https://doi.org/10.1111/febs.15025
Lacombe, M., Jaquinod, M., Belmudes, L., Couté, Y., Ramus, C., Combes, F., Burger, T., Mintz, E., Barthelon, J., Leroy, V., Poujois, A., Lachaux, A., Woimant, F., & Brun, V. (2020). Comprehensive and comparative exploration of the Atp7b −/− mouse plasma proteome. Metallomics, 10.1039.C9MT00225A. https://doi.org/10.1039/C9MT00225A
Di Giovanni, D., Lepetit, D., Guinet, B., Bennetot, B., Boulesteix, M., Couté, Y., Bouchez, O., Ravallec, M., & Varaldi, J. (2020). A behavior-manipulating virus relative as a source of adaptive genes for Drosophila parasitoids. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msaa030
Farhat, D. C., Swale, C., Dard, C., Cannella, D., Ortet, P., Barakat, M., Sindikubwabo, F., Belmudes, L., De Bock, P.-J., Couté, Y., Bougdour, A., & Hakimi, M.-A. (2020). A MORC-driven transcriptional switch controls Toxoplasma developmental trajectories and sexual commitment. Nature Microbiology. https://doi.org/10.1038/s41564-020-0674-4
Bouyssié, D., Hesse, A.-M., Mouton-Barbosa, E., Rompais, M., Macron, C., Carapito, C., de Peredo, A. G., Couté, Y., Dupierris, V., Burel, A., Menetrey, J.-P., Kalaitzakis, A., Poisat, J., Romdhani, A., Burlet-Schiltz, O., Cianférani, S., Garin, J., & Bruley, C. (2020). Proline: an efficient and user-friendly software suite for large-scale proteomics. Bioinformatics, btaa118. https://doi.org/10.1093/bioinformatics/btaa118
Jeudy, S., Bertaux, L., Alempic, J.-M., Lartigue, A., Legendre, M., Belmudes, L., Santini, S., Philippe, N., Beucher, L., Biondi, E. G., Juul, S., Turner, D. J., Couté, Y., Claverie, J.-M., & Abergel, C. (2020). Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world. The ISME Journal, 14(3), 727–739. https://doi.org/10.1038/s41396-019-0565-y
Nguyen, M. V. C., Courtier, A., Adrait, A., Defendi, F., Couté, Y., Baillet, A., Guigue, L., Gottenberg, J.-E., Dumestre-Pérard, C., Brun, V., & Gaudin, P. (2020). Fetuin-A and thyroxin binding globulin predict rituximab response in rheumatoid arthritis patients with insufficient response to anti-TNFα. Clinical Rheumatology. https://doi.org/10.1007/s10067-020-05030-6
Monestier, M., Pujol, A. M., Lamboux, A., Cuillel, M., Pignot-Paintrand, I., Cassio, D., Charbonnier, P., Um, K., Harel, A., Bohic, S., Gateau, C., Balter, V., Brun, V., Delangle, P., & Mintz, E. (2020). A liver-targeting Cu( i ) chelator relocates Cu in hepatocytes and promotes Cu excretion in a murine model of Wilson’s disease. Metallomics, 10.1039.D0MT00069H. https://doi.org/10.1039/D0MT00069H
Crespo, M., Damont, A., Blanco, M., Lastrucci, E., Kennani, S. E., Ialy-Radio, C., Khattabi, L. E., Terrier, S., Louwagie, M., Kieffer-Jaquinod, S., Hesse, A.-M., Bruley, C., Chantalat, S., Govin, J., Fenaille, F., Battail, C., Cocquet, J., & Pflieger, D. (2020). Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes. Nucleic Acids Research, 48(8), 4115–4138. https://doi.org/10.1093/nar/gkaa163
Postic, G., Marcoux, J., Reys, V., Andreani, J., Vandenbrouck, Y., Bousquet, M.-P., Mouton-Barbosa, E., Cianférani, S., Burlet-Schiltz, O., Guerois, R., Labesse, G., & Tufféry, P. (2020). Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration. Journal of Proteome Research, acs.jproteome.0c00066. https://doi.org/10.1021/acs.jproteome.0c00066
Van Gool, A., Corrales, F., Čolović, M., Krstić, D., Oliver-Martos, B., Martínez-Cáceres, E., Jakasa, I., Gajski, G., Brun, V., Kyriacou, K., Burzynska-Pedziwiatr, I., Wozniak, L. A., Nierkens, S., Pascual García, C., Katrlik, J., Bojic-Trbojevic, Z., Vacek, J., Llorente, A., Antohe, F., … Sammar, M. (2020). Analytical techniques for multiplex analysis of protein biomarkers. Expert Review of Proteomics, 1–17. https://doi.org/10.1080/14789450.2020.1763174
Couté, Y., Kraut, A., Zimmermann, C., Büscher, N., Hesse, A.-M., Bruley, C., De Andrea, M., Wangen, C., Hahn, F., Marschall, M., & Plachter, B. (2020). Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus. Microorganisms, 8(6), 820. https://doi.org/10.3390/microorganisms8060820
Kloehn, J., Oppenheim, R. D., Siddiqui, G., De Bock, P.-J., Kumar Dogga, S., Coute, Y., Hakimi, M.-A., Creek, D. J., & Soldati-Favre, D. (2020). Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondii. BMC Biology, 18(1), 67. https://doi.org/10.1186/s12915-020-00791-7
Hahn, F., Niesar, A., Wangen, C., Wild, M., Grau, B., Herrmann, L., Capci, A., Adrait, A., Couté, Y., Tsogoeva, S. B., & Marschall, M. (2020). Target verification of artesunate-related antiviral drugs: assessing the role of mitochondrial and regulatory proteins by click chemistry and fluorescence labeling. Antiviral Research, 104861. https://doi.org/10.1016/j.antiviral.2020.104861
Takata-Tsuji, F., Chounlamountri, N., Do, L.-D., Philippot, C., Novion Ducassou, J., Couté, Y., Ben Achour, S., Honnorat, J., Place, C., & Pascual, O. (2020). Microglia modulate gliotransmission through the regulation of VAMP2 proteins in astrocytes. Glia. https://doi.org/10.1002/glia.23884
Roblin, C., Chiumento, S., Bornet, O., Nouailler, M., Müller, C. S., Jeannot, K., Basset, C., Kieffer-Jaquinod, S., Couté, Y., Torelli, S., Le Pape, L., Schünemann, V., Olleik, H., De La Villeon, B., Sockeel, P., Di Pasquale, E., Nicoletti, C., Vidal, N., Poljak, L., … Duarte, V. (2020). The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties. Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.2004045117
Sansa, M., Defoort, M., Brenac, A., Hermouet, M., Banniard, L., Fafin, A., Gely, M., Masselon, C., Favero, I., Jourdan, G., & Hentz, S. (2020). Optomechanical mass spectrometry. Nature Communications, 11(1), 3781. https://doi.org/10.1038/s41467-020-17592-9
Couté, Y., Bruley, C., & Burger, T. (2020). Beyond target-decoy competition: stable validation of peptide and protein identifications in mass spectrometry-based discovery proteomics. Analytical Chemistry. https://doi.org/10.1021/acs.analchem.0c00328
Del Corpo, D., Fullone, M. R., Miele, R., Lafond, M., Pontiggia, D., Grisel, S., Kieffer‐Jaquinod, S., Giardina, T., Bellincampi, D., & Lionetti, V. (2020). AtPME17 is a functional Arabidopsis thaliana pectin methylesterase regulated by its PRO region that triggers PME activity in the resistance to Botrytis cinerea. Molecular Plant Pathology, mpp.13002. https://doi.org/10.1111/mpp.13002
Adrait, A., Dumonceau, J.-M., Delhaye, M., Annessi-Ramseyer, I., Frossard, J.-L., Coute, Y., & Farina, A. (2020). Liquid Biopsy of Bile based on Targeted Mass Spectrometry for the Diagnosis of Malignant Biliary Strictures. Clinical and Translational Science. https://doi.org/10.1111/cts.12890
Ngo, T.-D., Perdu, C., Jneid, B., Ragno, M., Novion Ducassou, J., Kraut, A., Couté, Y., Stopford, C., Attree, I., Rietsch, A., & Faudry, E. (2020). The PopN gate-keeper complex acts on the ATPase PscN to regulate the T3SS secretion switch from early to middle substrates in Pseudomonas aeruginosa. Journal of Molecular Biology. https://doi.org/10.1016/j.jmb.2020.10.024