Publications

Publications 2014

Engel, E., Viargues, P., Mortier, M., Taillebourg, E., Couté, Y., Thevenon, D., & Fauvarque, M.-O. (2014). Identifying USPs regulating immune signals in Drosophila: USP2 deubiquitinates Imd and promotes its degradation by interacting with the proteasome. Cell Communication and Signaling: CCS, 12, 41. https://doi.org/10.1186/PREACCEPT-1588328929121802
Forterre, A., Jalabert, A., Berger, E., Baudet, M., Chikh, K., Errazuriz, E., … Rome, S. (2014). Proteomic analysis of C2C12 myoblast and myotube exosome-like vesicles: a new paradigm for myoblast-myotube cross talk? PloS One, 9(1), e84153. https://doi.org/10.1371/journal.pone.0084153
van Rooyen, J. M., Murat, J.-B., Hammoudi, P.-M., Kieffer-Jaquinod, S., Coute, Y., Sharma, A., … Hakimi, M.-A. (2014). Assembly of the novel five-component apicomplexan multi-aminoacyl-tRNA synthetase complex is driven by the hybrid scaffold protein Tg-p43. PloS One, 9(2), e89487. https://doi.org/10.1371/journal.pone.0089487
Legres, L. G., Janin, A., Masselon, C., & Bertheau, P. (2014). Beyond laser microdissection technology: follow the yellow brick road for cancer research. American Journal of Cancer Research, 4(1), 1–28.
Niarakis, A., Bounab, Y., Grieco, L., Roncagalli, R., Hesse, A.-M., Garin, J., … Thieffry, D. (2014). Computational modeling of the main signaling pathways involved in mast cell activation. Current Topics in Microbiology and Immunology, 382, 69–93. https://doi.org/10.1007/978-3-319-07911-0_4
Hardré, H., Kuhn, L., Albrieux, C., Jouhet, J., Michaud, M., Seigneurin-Berny, D., … Maréchal, E. (2014). The selective biotin tagging and thermolysin proteolysis of chloroplast outer envelope proteins reveals information on protein topology and association into complexes. Frontiers in Plant Science, 5, 203. https://doi.org/10.3389/fpls.2014.00203
Biard, D., Filhol-Cochet, O., & Vandenbrouck, Y. (2014). Bio-Informatique : Dompter l’expression des gènes avec DSIR. Biofutur, 36(386), 52–55. Retrieved from https://biofutur.revuesonline.com/article.jsp?articleId=19855
Alban, C., Tardif, M., Mininno, M., Brugière, S., Gilgen, A., Ma, S., … Ravanel, S. (2014). Uncovering the protein lysine and arginine methylation network in Arabidopsis chloroplasts. PloS One, 9(4), e95512. https://doi.org/10.1371/journal.pone.0095512
Graindorge, M., Giustini, C., Kraut, A., Moyet, L., Curien, G., & Matringe, M. (2014). Three different classes of aminotransferases evolved prephenate aminotransferase functionality in arogenate-competent microorganisms. The Journal of Biological Chemistry, 289(6), 3198–3208. https://doi.org/10.1074/jbc.M113.486480
Elsen, S., Huber, P., Bouillot, S., Couté, Y., Fournier, P., Dubois, Y., … Attrée, I. (2014). A type III secretion negative clinical strain of Pseudomonas aeruginosa employs a two-partner secreted exolysin to induce hemorrhagic pneumonia. Cell Host & Microbe, 15(2), 164–176. https://doi.org/10.1016/j.chom.2014.01.003
Legendre, M., Bartoli, J., Shmakova, L., Jeudy, S., Labadie, K., Adrait, A., … Claverie, J.-M. (2014). Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proceedings of the National Academy of Sciences of the United States of America, 111(11), 4274–4279. https://doi.org/10.1073/pnas.1320670111
Nguyen-Lefebvre, A. T., Leprun, G., Morin, V., Viñuelas, J., Couté, Y., Madjar, J.-J., … Gonin-Giraud, S. (2014). V-erbA generates ribosomes devoid of RPL11 and regulates translational activity in avian erythroid progenitors. Oncogene, 33(12), 1581–1589. https://doi.org/10.1038/onc.2013.93
Lafaye, C., Barbier, E., Miscioscia, A., Saint-Pierre, C., Kraut, A., Couté, Y., … Breton, J. (2014). DNA binding of the p21 repressor ZBTB2 is inhibited by cytosine hydroxymethylation. Biochemical and Biophysical Research Communications, 446(1), 341–346. https://doi.org/10.1016/j.bbrc.2014.02.122
Trauchessec, M., Jaquinod, M., Bonvalot, A., Brun, V., Bruley, C., Ropers, D., … Ferro, M. (2014). Mass spectrometry-based workflow for accurate quantification of Escherichia coli enzymes: how proteomics can play a key role in metabolic engineering. Molecular & Cellular Proteomics: MCP, 13(4), 954–968. https://doi.org/10.1074/mcp.M113.032672
Doustaly, F., Combes, F., Fiévet, J. B., Berthet, S., Hugouvieux, V., Bastien, O., … Bourguignon, J. (2014). Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots. Metallomics: Integrated Biometal Science, 6(4), 809–821. https://doi.org/10.1039/c4mt00005f
Chapel, L., Burger, T., Courty, N., & Lefèvre, S. (2014). PerTurbo Manifold Learning Algorithm for Weakly Labeled Hyperspectral Image Classification. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 7(4), 1070–1078. https://doi.org/10.1109/JSTARS.2014.2304304
Gatto, L., Breckels, L. M., Wieczorek, S., Burger, T., & Lilley, K. S. (2014). Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata. Bioinformatics (Oxford, England), 30(9), 1322–1324. https://doi.org/10.1093/bioinformatics/btu013
Pasa-Tolic, L., & Masselon, C. (2014). Shining a spotlight on intact proteins. PROTEOMICS, 14(10), 1125–1127. https://doi.org/10.1002/pmic.201470073
Xiol, J., Spinelli, P., Laussmann, M. A., Homolka, D., Yang, Z., Cora, E., … Pillai, R. S. (2014). RNA clamping by Vasa assembles a piRNA amplifier complex on transposon transcripts. Cell, 157(7), 1698–1711. https://doi.org/10.1016/j.cell.2014.05.018
Milbradt, J., Kraut, A., Hutterer, C., Sonntag, E., Schmeiser, C., Ferro, M., … Marschall, M. (2014). Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus. Molecular & Cellular Proteomics: MCP, 13(8), 2132–2146. https://doi.org/10.1074/mcp.M113.035782
Tomizioli, M., Lazar, C., Brugière, S., Burger, T., Salvi, D., Gatto, L., … Ferro, M. (2014). Deciphering thylakoid sub-compartments using a mass spectrometry-based approach. Molecular & Cellular Proteomics: MCP, 13(8), 2147–2167. https://doi.org/10.1074/mcp.M114.040923
Gatto, L., Breckels, L. M., Burger, T., Nightingale, D. J. H., Groen, A. J., Campbell, C., … Lilley, K. S. (2014). A foundation for reliable spatial proteomics data analysis. Molecular & Cellular Proteomics: MCP, 13(8), 1937–1952. https://doi.org/10.1074/mcp.M113.036350
Schvartz, D., Couté, Y., & Sanchez, J.-C. (2014). Quantitative proteomics reveals the link between minichromosome maintenance complex and glucose-induced proliferation of rat pancreatic INS-1E β-cells. Journal of Proteomics, 108, 163–170. https://doi.org/10.1016/j.jprot.2014.05.013
Poirier, A. C., Schmitt, P., Rosa, R. D., Vanhove, A. S., Kieffer-Jaquinod, S., Rubio, T. P., … Destoumieux-Garzón, D. (2014). Antimicrobial histones and DNA traps in invertebrate immunity: evidences in Crassostrea gigas. The Journal of Biological Chemistry, 289(36), 24821–24831. https://doi.org/10.1074/jbc.M114.576546
Estellon, J., Ollagnier de Choudens, S., Smadja, M., Fontecave, M., & Vandenbrouck, Y. (2014). An integrative computational model for large-scale identification of metalloproteins in microbial genomes: a focus on iron-sulfur cluster proteins. Metallomics: Integrated Biometal Science, 6(10), 1913–1930. https://doi.org/10.1039/c4mt00156g
Courty, N., Gong, X., Vandel, J., & Burger, T. (2014). SAGA: sparse and geometry-aware non-negative matrix factorization through non-linear local embedding. Machine Learning, 97(1–2), 205–226. https://doi.org/10.1007/s10994-014-5463-y
Schild, F., Kieffer-Jaquinod, S., Palencia, A., Cobessi, D., Sarret, G., Zubieta, C., … Hugouvieux, V. (2014). Biochemical and biophysical characterization of the selenium-binding and reducing site in Arabidopsis thaliana homologue to mammals selenium-binding protein 1. The Journal of Biological Chemistry, 289(46), 31765–31776. https://doi.org/10.1074/jbc.M114.571208
Chapman, J. D., Goodlett, D. R., & Masselon, C. D. (2014). Multiplexed and data-independent tandem mass spectrometry for global proteome profiling. Mass Spectrometry Reviews, 33(6), 452–470. https://doi.org/10.1002/mas.21400